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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99747650_99751641_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
99747650 - 99751641
Intron Length:
3992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTTTGATTA
5'SS Class:
weak_major
3'SS Sequence:
AAATTTTGTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CTTTACTAAATT
Flanking Amino Acid:
LVKNEVCAFLISQVTGANIE
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.2
58
35.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
50.4
0.01
1.8
62.5
47.4
Minor 5ss
45.8
-0.4
2.7
59
40.7
Minor BPS
61.8
0.45
1.9
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042609
99747501 - 99779031
31531