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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99751868_99756590_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
99751868 - 99756590
Intron Length:
4723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
AAATTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
CCCTCCATAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
71.7
0.49
0.9
62.6
43.2
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
55.7
0.26
1.8
69.83
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024827
99751695 - 99800749
49055