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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99751868_99774137_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99751868 - 99774137
Intron Length:
22270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
AAATTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
CCCTCCATAAAT
Flanking Amino Acid:
RQSKLESLNQVERLKLENTS
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
71.7
0.49
0.9
62.6
43.2
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
55.7
0.26
1.8
69.83
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002348
99711842 - 99779058
67217
ENSAPLT00000029848
99640942 - 99800749
159808
ENSAPLT00000002346
99735109 - 99779043
43935
ENSAPLT00000026957
99709674 - 99779058
69385
ENSAPLT00000023388
99640942 - 99801573
160632
ENSAPLT00000047942
99751432 - 99800749
49318
ENSAPLT00000019203
99703327 - 99800749
97423
ENSAPLT00000043105
99658476 - 99779058
120583