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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99756691_99774137_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99756691 - 99774137
Intron Length:
17447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTACTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTTTCTTTACTT
Flanking Amino Acid:
RQSKLESLNQMNGRTNTLRT
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
74
0.6
1
65.6
41.1
Major PPT
75.7
0.58
1
80.4
30.5
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
68.9
0.67
1.6
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024827
99751695 - 99800749
49055