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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99774247_99777100_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99774247 - 99777100
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
AAATCACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAT
Flanking Amino Acid:
ELQKILQKEREMNVFLEKEV
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.3
0.43
1
63.9
41.9
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002348
99711842 - 99779058
67217
ENSAPLT00000026957
99709674 - 99779058
69385
ENSAPLT00000002346
99735109 - 99779043
43935
ENSAPLT00000024827
99751695 - 99800749
49055
ENSAPLT00000047942
99751432 - 99800749
49318
ENSAPLT00000023388
99640942 - 99801573
160632
ENSAPLT00000043105
99658476 - 99779058
120583
ENSAPLT00000019203
99703327 - 99800749
97423
ENSAPLT00000029848
99640942 - 99800749
159808