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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99774247_99778342_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99774247 - 99778342
Intron Length:
4096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGATTTGT
5'SS Class:
major
3'SS Sequence:
AAATCACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAT
Flanking Amino Acid:
EFFKDFHQNTIMNVFLEKEV
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
69.7
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.3
0.43
1
63.9
41.9
Minor 5ss
39
-1.2
3
53.8
43.6
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042609
99747501 - 99779031
31531