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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99779059_99801026_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
99779059 - 99801026
Intron Length:
21968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
AAAATATTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.6
0.8
0.7
85.1
29.7
Minor 5ss
30.5
-2.2
3.6
38.1
46.8
Minor BPS
46.9
-0.1
1.8
62.57
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002342
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023388
99640942 - 99801573
160632