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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99843320_99847363_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99843320 - 99847363
Intron Length:
4044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATATTTTATTT
Flanking Amino Acid:
GAVFVEDLDESFKENRKDDI
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.3
71.5
38.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78
0.63
0.7
69.8
31
Minor 5ss
36.9
-1.5
3.3
51.3
39.7
Minor BPS
56.7
0.29
1.6
73.05
38.4

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010711
99842986 - 99867347
24362