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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99847404_99849107_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99847404 - 99849107
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATG
Flanking Amino Acid:
NRKDDIWLVDFYAPWCGHCK
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.5
0.75
0.7
81.4
29.8
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
71.2
0.53
1.3
70.08
38.2

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010711
99842986 - 99867347
24362