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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99850798_99852698_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99850798 - 99852698
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
CCTGTTTATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCCTGTTTATCC
Flanking Amino Acid:
FGVRGYPTIKLLKGDLAYNY
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.3
39.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.9
0.61
0.9
69
41
Minor 5ss
42.5
-0.8
2.8
59.1
45.4
Minor BPS
49.2
-0
2
61.09
45

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039804
99850014 - 99867347
17334
ENSAPLT00000010711
99842986 - 99867347
24362