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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99852780_99853623_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99852780 - 99853623
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAGAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
DIIEFANRVAGPLIRPLPSQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
55.1
0.13
1.2
52.7
41.6
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039804
99850014 - 99867347
17334
ENSAPLT00000010711
99842986 - 99867347
24362