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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99853724_99853958_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99853724 - 99853958
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAAAC
5'SS Class:
major
3'SS Sequence:
GTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGACATTTAAAA
Flanking Amino Acid:
VYVGGESPLKEKYIEVASEL
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
68.9
35.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.7
0.8
0.8
80.8
36.6
Minor 5ss
36.2
-1.6
2.7
43.5
43.8
Minor BPS
48.8
-0.1
1.6
55.83
35.8

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010711
99842986 - 99867347
24362
ENSAPLT00000039804
99850014 - 99867347
17334