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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99855516_99857726_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99855516 - 99857726
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTGTCTTTAATT
Flanking Amino Acid:
FKDGTYFVYDEYEDGDLSSW
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
78
0.96
1.1
84.33
36.9

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039804
99850014 - 99867347
17334
ENSAPLT00000010711
99842986 - 99867347
24362