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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99857826_99859028_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99857826 - 99859028
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTCCTTATTT
Flanking Amino Acid:
GFTLYELGDTGKLVAIAVID
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.7
81.6
28.8
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
76.5
0.91
1.5
89.27
35.4

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039804
99850014 - 99867347
17334
ENSAPLT00000010711
99842986 - 99867347
24362