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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99860357_99863095_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99860357 - 99863095
Intron Length:
2739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTATGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCTTTAAAT
Flanking Amino Acid:
GNDYINSLLMDDLTIPTIVV
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.3
0.8
0.9
77
41.9
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
80.8
1.05
1.2
91.8
30.2

Associated Gene:

Gene:
TMX3
Ensembl Gene ID:
ENSAPLG00000010231
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010711
99842986 - 99867347
24362
ENSAPLT00000039804
99850014 - 99867347
17334