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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99897431_99898485_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99897431 - 99898485
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTTTTTAATC
Flanking Amino Acid:
GKNLCGKDKLWRYHCWNESW
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.8
0.72
0.7
75.9
26.4
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
70.5
0.62
1.1
71.62
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019540
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021607
99896995 - 99904269
7275