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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99898590_99898697_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
99898590 - 99898697
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCACCTGGCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGGTTTTCACCT
Flanking Amino Acid:
LDPTPLETGRGSSCSGPTWV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
58.9
0.2
1
57.4
38.3
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
49.2
0.02
1.8
67.99
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019540
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021607
99896995 - 99904269
7275