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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99898941_99899741_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99898941 - 99899741
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
ACTTCCATAAGA
Flanking Amino Acid:
DITGSYKYELGSVKSKEAYY
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
86.6
0.82
0.7
82.5
26.2
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
58.5
0.26
1.9
70.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019540
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021607
99896995 - 99904269
7275