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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99900069_99900999_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99900069 - 99900999
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATAACTTAAAT
Flanking Amino Acid:
SVTVALGPREVKKIPLCISY
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
60.4
0.41
1.7
75.59
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019540
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021607
99896995 - 99904269
7275