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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99901158_99901475_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99901158 - 99901475
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
VINRPPVIVKLLSQPRLKVP
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.4
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.2
0.5
1
66.9
43.8
Minor 5ss
31.9
-2.1
3.2
42.1
45
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019540
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021607
99896995 - 99904269
7275