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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100076882_100077409_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
100076882 - 100077409
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAGTTTTTAACG
Flanking Amino Acid:
AYLTLDHQLQPLAPCPNSKE
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.9
78
40.1
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
70.2
0.49
1.3
67.7
40.3

Associated Gene:

Gene:
MAP3K7
Ensembl Gene ID:
ENSAPLG00000002702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045540
100072539 - 100121841
49303
ENSAPLT00000037233
100072539 - 100121841
49303
ENSAPLT00000002739
100072539 - 100121841
49303