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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100098832_100099245_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
100098832 - 100099245
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATAACAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTATTATTAACA
Flanking Amino Acid:
IVKIMTHLMRYFPGADEPLQ
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.1
52
39.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
37.3
-1.4
3.1
41.9
45
Minor BPS
65.5
0.48
1.6
73.02
38.6

Associated Gene:

Gene:
MAP3K7
Ensembl Gene ID:
ENSAPLG00000002702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045540
100072539 - 100121841
49303
ENSAPLT00000037233
100072539 - 100121841
49303
ENSAPLT00000002739
100072539 - 100121841
49303