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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100105534_100106659_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
100105534 - 100106659
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTTA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTTTGACA
Flanking Amino Acid:
ALIHRDLKPPNLLLVAGGTV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.8
33.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.3
0.73
0.9
79.7
32.4
Minor 5ss
44.1
-0.6
3.1
57.4
41.7
Minor BPS
78
0.87
1.1
84.01
28.9

Associated Gene:

Gene:
MAP3K7
Ensembl Gene ID:
ENSAPLG00000002702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045540
100072539 - 100121841
49303
ENSAPLT00000037233
100072539 - 100121841
49303
ENSAPLT00000002739
100072539 - 100121841
49303