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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100107698_100108657_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
100107698 - 100108657
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CCTCTTCACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCCCTCTTCACA
Flanking Amino Acid:
VKLYGACLNPVCLVMEYAEG
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
61.9
0.27
1
62.9
31
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
54.6
0.14
1.8
63.68
43.1

Associated Gene:

Gene:
MAP3K7
Ensembl Gene ID:
ENSAPLG00000002702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045540
100072539 - 100121841
49303
ENSAPLT00000037233
100072539 - 100121841
49303
ENSAPLT00000002739
100072539 - 100121841
49303