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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100108724_100110329_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
100108724 - 100110329
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
ATTTGTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGGTTTGAAAT
Flanking Amino Acid:
ESERKAFIVELRQLSRVNHP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.9
0.7
0.9
74.6
39.4
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
48.3
-0
1.6
63.66
40.9

Associated Gene:

Gene:
MAP3K7
Ensembl Gene ID:
ENSAPLG00000002702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045540
100072539 - 100121841
49303
ENSAPLT00000037233
100072539 - 100121841
49303
ENSAPLT00000002739
100072539 - 100121841
49303