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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100134944_100174670_F

Intron Information:

Intron Rank:
134461
Intron Class:
major
Intron Phase:
Intron Coordinates:
100134944 - 100174670
Intron Length:
39727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.7
0.89
0.7
84.8
28.7
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033963
100134176 - 100175089
40914