Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100174809_100198094_F

Intron Information:

Intron Rank:

134462

Intron Class:

major

Intron Phase:

Intron Coordinates:

100174809 - 100198094

Intron Length:

23286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTAAT

5'SS Class:

major

3'SS Sequence:

TTCTTCTTCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TGTTTTGTATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

78.1

38.2

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

75.3

0.57

74.9

33.7

Minor 5ss

41.9

-0.9

59.8

44.7

Minor BPS

46.5

-0.2

2.1

61.73

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046943

100174671 - 100221459

46789

ENSAPLT00000035070

100174587 - 100221459

46873