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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100198211_100198424_F

Intron Information:

Intron Rank:
134466
Intron Class:
major
Intron Phase:
Intron Coordinates:
100198211 - 100198424
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATTTATGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
47.2
-0.3
1.6
51.85
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046943
100174671 - 100221459
46789
ENSAPLT00000043799
100174671 - 100221459
46789