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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100198211_100220789_F

Intron Information:

Intron Rank:
134463
Intron Class:
major
Intron Phase:
Intron Coordinates:
100198211 - 100220789
Intron Length:
22579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TATGCTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.1
0.45
0.9
63.8
37.6
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035070
100174587 - 100221459
46873