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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100270305_100275968_F

Intron Information:

Intron Rank:
149688
Intron Class:
major
Intron Phase:
Intron Coordinates:
100270305 - 100275968
Intron Length:
5664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.7
36.4
Major BPS
62
0.3
1
53
34.1
Major PPT
89.8
0.9
0.6
89.3
19.6
Minor 5ss
32.3
-2
3.7
47
48.4
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030553
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019631
100270289 - 100276813
6525