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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_100276049_100276719_F

Intron Information:

Intron Rank:
149689
Intron Class:
major
Intron Phase:
Intron Coordinates:
100276049 - 100276719
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
GCTTAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
62.7
0.48
1.8
79.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030553
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019888
100265894 - 100276813
10920
ENSAPLT00000019631
100270289 - 100276813
6525