About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10054155_10074453_F

Intron Information:

Intron Rank:
138442
Intron Class:
major
Intron Phase:
Intron Coordinates:
10054155 - 10074453
Intron Length:
20299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTGCATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTCGTATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.2
0.52
1
64.9
40.4
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
49
-0
2
65.36
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043467
10053804 - 10076055
22252