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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1008556_1010009_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1008556 - 1010009
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCCTTCTTCACA
Flanking Amino Acid:
SMNIPALVGKGCLILSDELN
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
83.7
0.76
0.7
78.9
26.7
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
62.3
0.38
1.8
70.02
42.9

Associated Gene:

Gene:
SPTLC3
Ensembl Gene ID:
ENSAPLG00000011146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011600
954416 - 1047987
93572
ENSAPLT00000048085
964035 - 1047987
83953
ENSAPLT00000021081
964035 - 1045732
81698