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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1010104_1020718_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1010104 - 1020718
Intron Length:
10615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTAAATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
GATIRIFKHNNMQSLEKLLR
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.8
0.42
1.1
69.6
38.9
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
SPTLC3
Ensembl Gene ID:
ENSAPLG00000011146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048085
964035 - 1047987
83953
ENSAPLT00000021081
964035 - 1045732
81698
ENSAPLT00000011600
954416 - 1047987
93572