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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10110282_10125158_R

Intron Information:

Intron Rank:
152284
Intron Class:
major
Intron Phase:
Intron Coordinates:
10110282 - 10125158
Intron Length:
14877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TGGTATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTGGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.1
0.65
1
72.4
42.2
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
44.5
-0.3
2.7
74.56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030766
10110079 - 10164991
54913