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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101271889_101330918_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101271889 - 101330918
Intron Length:
59030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
TATTGGTAAAGT
Flanking Amino Acid:
SLKTPLGTCSS*
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
42.2
-0.5
2.7
68.36
48.3

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041805
101271699 - 101480139
208441