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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101289094_101329622_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101289094 - 101329622
Intron Length:
40529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATTT
Flanking Amino Acid:
SLESVARMTIEEREAR*
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.6
39.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
49.4
0.03
1.8
68.97
42.5

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030484
101288831 - 101480139
191309