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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101316248_101329622_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101316248 - 101329622
Intron Length:
13375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
GTTTGTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTGTTTGACA
Flanking Amino Acid:
SLESVARMTIEIKNMPGALQ
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.6
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
1
72.2
42.7
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
63.4
0.41
1.8
74.82
36.8

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042574
101316181 - 101480139
163959