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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101329779_101330918_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101329779 - 101330918
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
AACAACTTACTT
Flanking Amino Acid:
SLKTPLGTCSRPISPLLDQN
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
81.2
0.7
0.7
77.1
25
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.6
-0.1
1.8
61.27
42.5

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030484
101288831 - 101480139
191309
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959