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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101335949_101336989_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101335949 - 101336989
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTCTTCCATA
Flanking Amino Acid:
DDPEAVYTTTGGKIPVRWTA
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
64.7
35.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
84
0.77
0.6
80.7
24.7
Minor 5ss
32.7
-2
3.5
48.1
47.5
Minor BPS
57
0.21
1.9
75.09
37.1

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030484
101288831 - 101480139
191309
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959
ENSAPLT00000041805
101271699 - 101480139
208441