About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101338245_101338806_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101338245 - 101338806
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCATGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AGTTCCTCAAAG
Flanking Amino Acid:
VVHLEGVVTRGKPVMIVIEY
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.1
0.59
0.9
73.7
36.7
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
59.9
0.17
1.8
64.89
42.2

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959