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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101348228_101354328_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101348228 - 101354328
Intron Length:
6101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
LDVATLEEATATAVSSEQNP
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
85.8
0.81
0.8
80
30.9
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309