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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101358153_101423231_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101358153 - 101423231
Intron Length:
65079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGATA
Flanking Amino Acid:
AAVSITTGQAAPSQVSGVMK
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.8
0.4
1
62.9
37.5
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
61.1
0.34
1.5
71.74
33.7

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959