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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101423568_101424449_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101423568 - 101424449
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
GTGTGTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATGAT
U12 Branch Point Sequence:
TGATGCTGGACT
Flanking Amino Acid:
PSDPPYVACTRPPSAPQNLI
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
54.3
0.11
1.4
47.7
45.7
Major PPT
67.4
0.39
1
61.2
43.9
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
53
0.17
2
73.75
42.8

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309