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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101424606_101470825_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101424606 - 101470825
Intron Length:
46220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAAATCTTAATT
Flanking Amino Acid:
GYQQKGDTCEPCGRGFYKSS
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.7
0.49
0.9
70
36.5
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
70.5
0.72
1.2
78.67
37.2

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309