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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101471496_101475860_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101471496 - 101475860
Intron Length:
4365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTATTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATTACTAACT
Flanking Amino Acid:
LEWISSPPNGWEEISGLDEN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.2
0.61
0.9
74.8
39.8
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
55
0.24
1.9
77.35
38.3

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309