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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101475926_101480042_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101475926 - 101480042
Intron Length:
4117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAAAA
U12 Branch Point Sequence:
TTTTTTTTTCTT
Flanking Amino Acid:
HTGEAQAAKEVILLDSKAQQ
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
47.2
-0.1
1.3
51
41.5
Major PPT
84.8
0.78
0.6
84.1
24
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
43.7
-0.4
3.5
78.47
38.5

Associated Gene:

Gene:
EPHA7
Ensembl Gene ID:
ENSAPLG00000002816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002856
101328334 - 101480139
151806
ENSAPLT00000042574
101316181 - 101480139
163959
ENSAPLT00000041805
101271699 - 101480139
208441
ENSAPLT00000030484
101288831 - 101480139
191309
ENSAPLT00000019257
101316181 - 101480139
163959
ENSAPLT00000048094
101298033 - 101480139
182107