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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101500643_101501338_F

Intron Information:

Intron Rank:
133489
Intron Class:
major
Intron Phase:
Intron Coordinates:
101500643 - 101501338
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.9
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.9
0.9
0.7
89
28.1
Minor 5ss
31.1
-2.2
2.6
30
35.1
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021806
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024620
101489118 - 101504955
15838