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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101689679_101691218_R

Intron Information:

Intron Rank:
135327
Intron Class:
major
Intron Phase:
Intron Coordinates:
101689679 - 101691218
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGAACTT
5'SS Class:
major
3'SS Sequence:
CCTCTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTCTTCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1
64.9
41
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
75.8
0.58
0.7
68.8
31.7
Minor 5ss
30.4
-2.2
3.6
46.9
48.4
Minor BPS
66.7
0.6
1.6
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020213
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020938
101686143 - 101691286
5144