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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_101731028_101775069_R

Intron Information:

Intron Rank:
140196
Intron Class:
major
Intron Phase:
Intron Coordinates:
101731028 - 101775069
Intron Length:
44042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGATTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.7
0.55
1
69.5
41.4
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
60.7
0.19
1.7
68.66
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022810
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045134
101713514 - 101775236
61723